cmp.bidsappmanager.stages.segmentation.segmentation module
Definition of segmentation config and stage UI classes.
- class cmp.bidsappmanager.stages.segmentation.segmentation.SegmentationConfigUI[source]
Bases:
cmp.stages.segmentation.segmentation.SegmentationConfigClass that extends the
SegmentationConfigwith graphical components.- custom_brainmask_group
VGroup that displays the different parts of a custom BIDS brain mask file
- Type
traits.ui.VGroup
- custom_gm_mask_group
VGroup that displays the different parts of a custom BIDS gray matter mask file
- Type
traits.ui.VGroup
- custom_wm_mask_group
VGroup that displays the different parts of a custom BIDS white matter mask file
- Type
traits.ui.VGroup
- custom_csf_mask_group
VGroup that displays the different parts of a custom BIDS CSF mask file
- Type
traits.ui.VGroup
- custom_aparcaseg_group
VGroup that displays the different parts of a custom BIDS-formatted Freesurfer’s aparc+aseg file
- Type
traits.ui.VGroup
- traits_view
TraitsUI view that displays the attributes of this class, e.g. the parameters for the stage
- Type
traits.ui.View
- class cmp.bidsappmanager.stages.segmentation.segmentation.SegmentationStageUI(subject, session, bids_dir, output_dir)[source]
Bases:
cmp.stages.segmentation.segmentation.SegmentationStageClass that extends the
SegmentationStagewith graphical components.- inspect_output_button
Button that displays the selected output in an appropriate viewer (present only in the window for quality inspection)
- Type
traits.ui.Button
- inspect_outputs_view
TraitsUI view that displays the quality inspection window of this stage
- Type
traits.ui.View
- config_view
TraitsUI view that displays the configuration window of this stage
- Type
traits.ui.View