cmp.bidsappmanager.stages.connectome.connectome module¶
Definition of structural connectome config and stage UI classes.
-
class
cmp.bidsappmanager.stages.connectome.connectome.
ConnectomeConfigUI
[source]¶ Bases:
cmp.stages.connectome.connectome.ConnectomeConfig
Class that extends the
ConnectomeConfig
with graphical components.-
output_types
¶ A list of
output_types
. Validoutput_types
are ‘gPickle’, ‘mat’, ‘cff’, ‘graphml’- Type
list of string
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connectivity_metrics
¶ A list of connectivity metrics to stored. Valid
connectivity_metrics
are ‘Fiber number’, ‘Fiber length’, ‘Fiber density’, ‘Fiber proportion’, ‘Normalized fiber density’, ‘ADC’, ‘gFA’- Type
list of string
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traits_view
¶ TraitsUI view that displays the Attributes of this class
- Type
traits.ui.View
-
-
class
cmp.bidsappmanager.stages.connectome.connectome.
ConnectomeStageUI
(bids_dir, output_dir)[source]¶ Bases:
cmp.stages.connectome.connectome.ConnectomeStage
Class that extends the
ConnectomeStage
with graphical components.-
log_visualization
¶ If True, display with a log transformation
- Type
traits.Bool
-
circular_layout
¶ If True, display the connectivity matrix using a circular layout
- Type
traits.Bool
Button that displays the selected connectivity matrix in the graphical component for quality inspection
- Type
traits.ui.Button
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inspect_outputs_view
¶ TraitsUI view that displays the quality inspection window of this stage
- Type
traits.ui.View
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config_view
¶ TraitsUI view that displays the configuration window of this stage
- Type
traits.ui.View
-