cmp.stages.common module¶
Definition of common parent classes for stages.
-
class
cmp.stages.common.
Stage
[source]¶ Bases:
traits.has_traits.HasTraits
Parent class that extends
HasTraits
and represents a processing pipeline stage.It is extended by the various pipeline stage subclasses.
-
bids_dir
¶ BIDS dataset root directory
- Type
traits.Str
-
output_dir
¶ Output directory
- Type
traits.Str
-
inspect_outputs
¶ Dictionary of stage outputs with corresponding commands for visual inspection (Initialization: ‘Outputs not available’)
- Type
traits.Dict
-
inspect_outputs_enum
¶ Choice of output to be visually inspected (values=’inspect_outputs’)
- Type
traits.Enum
-
enabled
¶ Stage enabled in the pipeline (Default: True)
- Type
traits.Bool
-
config
¶ Instance of stage configuration
- Type
Instance(HasTraits)
See also
cmp.stages.preprocessing.preprocessing.PreprocessingStage
,cmp.stages.diffusion.diffusion.DiffusionStage
,cmp.stages.registration.registration.RegistrationStage
,cmp.stages.connectome.connectome.ConnectomeStage
,cmp.stages.preprocessing.fmri_preprocessing.PreprocessingStage
,cmp.stages.functional.functionalMRI.FunctionalMRIStage
,cmp.stages.connectome.fmri_connectome.ConnectomeStage
-
enabled
= True¶
-
inspect_outputs
= ['Outputs not available']¶
-