cmp.bidsappmanager.stages.connectome.fmri_connectome module¶

Definition of functional connectome config and stage UI classes.

class cmp.bidsappmanager.stages.connectome.fmri_connectome.ConnectomeConfigUI[source]¶

Class that extends the ConnectomeConfig with graphical components.

output_types¶

A list of output_types. Valid output_types are ‘gPickle’, ‘mat’, ‘cff’, ‘graphml’

traits_view¶

TraitsUI view that displays the Attributes of this class

class cmp.bidsappmanager.stages.connectome.fmri_connectome.ConnectomeStageUI(bids_dir, output_dir)[source]¶

Class that extends the ConnectomeStage with graphical components.

log_visualization¶

If True, display with a log transformation

circular_layout¶

If True, display the connectivity matrix using a circular layout

inspect_output_button¶

Button that displays the selected connectivity matrix in the graphical component for quality inspection

inspect_outputs_view¶

TraitsUI view that displays the quality inspection window of this stage

config_view¶

TraitsUI view that displays the configuration window of this stage