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Getting started

  • Installation Instructions for Users

User Documentation

  • Connectome Mapper 3 and the BIDS standard
  • Commandline Usage
  • Graphical User Interface
  • Outputs of Connectome Mapper 3

API Documentation

  • Packages and modules
    • cmp package
    • cmtklib package
      • Subpackages
        • cmtklib.bids package
        • cmtklib.interfaces package
      • Submodules

Examples & Tutorials

  • Adopting Datalad for collaboration
  • Running on a cluster (HPC)

About Connectome Mapper

  • BSD 3-Clause License
  • Changes
  • Citing
  • Contributing to Connectome Mapper 3
  • Support, Bugs and New Feature Requests
Connectome Mapper 3
  • Docs »
  • Packages and modules »
  • cmtklib.interfaces package
  • Edit on GitHub

cmtklib.interfaces package¶

Submodules¶

  • cmtklib.interfaces.afni module
    • Bandpass
    • Despike
  • cmtklib.interfaces.ants module
    • MultipleANTsApplyTransforms
  • cmtklib.interfaces.camino module
    • DTLUTGen
    • PicoPDFs
    • Voxel2Image
  • cmtklib.interfaces.camino2trackvis module
    • Camino2Trackvis
  • cmtklib.interfaces.diffusion_toolkit module
    • DTIRecon
    • DiffUnpack
    • HARDIMat
  • cmtklib.interfaces.dipy module
    • CSD
    • DTIEstimateResponseSH
    • DirectionGetterTractography
    • MAPMRI
    • SHORE
    • TensorInformedEudXTractography
  • cmtklib.interfaces.freesurfer module
    • BBRegister
    • Tkregister2
    • copyBrainMaskToFreesurfer
    • copyFileToFreesurfer
  • cmtklib.interfaces.fsl module
    • ApplymultipleWarp
    • ApplymultipleXfm
    • BinaryThreshold
    • CreateAcqpFile
    • CreateIndexFile
    • Eddy
    • EddyOpenMP
    • FSLCreateHD
    • MathsCommand
    • Orient
  • cmtklib.interfaces.misc module
    • ConcatOutputsAsTuple
    • ExtractHeaderVoxel2WorldMatrix
    • ExtractImageVoxelSizes
  • cmtklib.interfaces.mrtrix3 module
    • ApplymultipleMRConvert
    • ApplymultipleMRCrop
    • ApplymultipleMRTransforms
    • ConstrainedSphericalDeconvolution
    • DWI2Tensor
    • DWIBiasCorrect
    • DWIDenoise
    • Erode
    • EstimateResponseForSH
    • ExtractFSLGrad
    • ExtractMRTrixGrad
    • FilterTractogram
    • Generate5tt
    • GenerateGMWMInterface
    • MRConvert
    • MRCrop
    • MRThreshold
    • MRTransform
    • MRTrix3Base
    • MRtrix_mul
    • SIFT2
    • StreamlineTrack
    • Tensor2Vector
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© Copyright 2018-2021, Ecole Polytechnique Federale de Lausanne (EPFL), the University Hospital Center and University of Lausanne (UNIL-CHUV), Switzerland, and Contributors, all rights reserved. Revision 249e4e54.

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© Copyright 2018-2021, Ecole Polytechnique Federale de Lausanne (EPFL), the University Hospital Center and University of Lausanne (UNIL-CHUV), Switzerland, and Contributors, all rights reserved.. Last updated on Mar 08, 2021. Created using Sphinx 3.4.0.