cmp.bidsappmanager.gui.handlers module

class cmp.bidsappmanager.gui.handlers.BIDSAppInterfaceWindowHandler

Bases: traitsui.handler.Handler

Event handler of the BIDS App Interface window.

docker_process

Instance of subprocess.Popen where BIDS App docker image is run

Type

subprocess.Popen

check_settings(ui_info)

Function that checks if all parameters are properly set before execution of the BIDS App.

Parameters

ui_info (QtView) – TraitsUI QtView associated with self

classmethod manage_bidsapp_procs(proclist)

Function that managed the parallelized BIDS App Popen process.

Parameters

proclist – List of Popen processes running the BIDS App on a single subject

start_bids_app(ui_info)

Main function that runs the BIDS App on a set or sub-set of participants.

Parameters

ui_info (QtView) – TraitsUI QtView associated with this handler

classmethod start_bidsapp_process(participant_label)

Function that runs the BIDS App on a single subject.

Parameters

• ui_info (QtView) – TraitsUI QtView associated with this handler

• participant_label (string) – Label of the participant / subject (e.g. "01", no “sub-” prefix)

classmethod stop_bids_app()

Function that stops the BIDS execution.

Parameters

ui_info (QtView) – TraitsUI QtView associated with this handler

class cmp.bidsappmanager.gui.handlers.ConfigQualityWindowHandler

Bases: traitsui.handler.Handler

Event handler of the Configurator and Inspector (Quality Control) windows.

project_loaded

Indicate if project has been successfully loaded (Default: False)

Type

traits.Bool

anat_pipeline

Instance of AnatomicalPipelineUI class

Type

Instance(HasTraits)

anat_inputs_checked

Indicate if anatomical pipeline inputs are available (Default: False)

Type

traits.Bool

anat_outputs_checked

Indicate if anatomical pipeline outputs are available (Default: False)

Type

traits.Bool

anatomical_processed

Indicate if anatomical pipeline was run (Default: False)

Type

traits.Bool

dmri_pipeline

Instance of DiffusionPipelineUI class

Type

Instance(HasTraits)

dmri_inputs_checked

Indicate if diffusion pipeline inputs are available (Default: False)

Type

traits.Bool

dmri_processed

Indicate if diffusion pipeline was run (Default: False)

Type

traits.Bool

fmri_pipeline

Instance of fMRIPipelineUI class

Type

Instance(HasTraits)

fmri_inputs_checked

Indicate if fMRI pipeline inputs are available (Default: False)

Type

traits.Bool

fmri_processed

Indicate if fMRI pipeline was run (Default: False)

Type

traits.Bool

load_anat_config_file(ui_info)

Function that loads the anatomical pipeline configuration file.

Parameters

ui_info (QtView) – TraitsUI QtView associated with self

load_dmri_config_file(ui_info)

Function that loads the diffusion pipeline configuration file.

Parameters

ui_info (QtView) – TraitsUI QtView associated with self

load_fmri_config_file(ui_info)

Function that loads the fMRI pipeline configuration file.

Parameters

ui_info (QtView) – TraitsUI QtView associated with self

load_project(ui_info)

Function that creates a new ProjectInfoUI instance from an existing project.

Parameters

ui_info (QtView) – TraitsUI QtView associated with self

new_project(ui_info)

Function that creates a new ProjectInfoUI instance.

Parameters

ui_info (QtView) – TraitsUI QtView associated with self

classmethod save_anat_config_file(ui_info)

Function that saves the anatomical pipeline configuration file.

Parameters

ui_info (QtView) – TraitsUI QtView associated with self

classmethod save_dmri_config_file(ui_info)

Function that saves the diffusion pipeline configuration file.

Parameters

ui_info (QtView) – TraitsUI QtView associated with self

classmethod save_fmri_config_file(ui_info)

Function that saves the fMRI pipeline configuration file.

Parameters

ui_info (QtView) – TraitsUI QtView associated with self

classmethod show_bidsapp_window()

Function that shows the BIDS App Interface Window.

Parameters

ui_info (QtView) – TraitsUI QtView associated with this handler

update_subject_anat_pipeline(ui_info)

Function that updates attributes of the AnatomicalPipelineUI instance.

Parameters

ui_info (QtView) – TraitsUI QtView associated with self

update_subject_dmri_pipeline(ui_info)

Function that updates attributes of the DiffusionPipelineUI instance.

Parameters

ui_info (QtView) – TraitsUI QtView associated with self

update_subject_fmri_pipeline(ui_info)

Function that updates attributes of the fMRIPipelineUI instance.

Parameters

ui_info (QtView) – TraitsUI QtView associated with self

class cmp.bidsappmanager.gui.handlers.MainWindowHandler

Bases: traitsui.handler.Handler

Event handler of the Configurator and Inspector (Quality Control) windows.

project_loaded

Indicate if project has been successfully loaded (Default: False)

Type

traits.Bool

anat_pipeline

Instance of AnatomicalPipelineUI class

Type

Instance(HasTraits)

anat_inputs_checked

Indicate if anatomical pipeline inputs are available (Default: False)

Type

traits.Bool

anat_outputs_checked

Indicate if anatomical pipeline outputs are available (Default: False)

Type

traits.Bool

anatomical_processed

Indicate if anatomical pipeline was run (Default: False)

Type

traits.Bool

dmri_pipeline

Instance of DiffusionPipelineUI class

Type

Instance(HasTraits)

dmri_inputs_checked

Indicate if diffusion pipeline inputs are available (Default: False)

Type

traits.Bool

dmri_processed

Indicate if diffusion pipeline was run (Default: False)

Type

traits.Bool

fmri_pipeline

Instance of fMRIPipelineUI class

Type

Instance(HasTraits)

fmri_inputs_checked

Indicate if fMRI pipeline inputs are available (Default: False)

Type

traits.Bool

fmri_processed

Indicate if fMRI pipeline was run (Default: False)

Type

traits.Bool

load_dataset(ui_info, debug=False)

Function that creates a new ProjectInfoUI instance from an existing project.

Parameters

• ui_info (QtView) – TraitsUI QtView associated with self

• debug (bool) – If True, print more information for debugging