cmp.stages.common module
Definition of common parent classes for stages.
- class cmp.stages.common.Stage[source]
Bases:
traits.has_traits.HasTraits
Parent class that extends
HasTraits
and represents a processing pipeline stage.It is extended by the various pipeline stage subclasses.
- bids_subject_label
BIDS subject (participant) label
- Type
traits.Str
- bids_session_label
BIDS session label
- Type
traits.Str
- bids_dir
BIDS dataset root directory
- Type
traits.Str
- output_dir
Output directory
- Type
traits.Str
- inspect_outputs
Dictionary of stage outputs with corresponding commands for visual inspection (Initialization: ‘Outputs not available’)
- Type
traits.Dict
- inspect_outputs_enum
Choice of output to be visually inspected (values=’inspect_outputs’)
- Type
traits.Enum
- enabled
Stage enabled in the pipeline (Default: True)
- Type
traits.Bool
- config
Instance of stage configuration
- Type
Instance(HasTraits)
See also
cmp.stages.preprocessing.preprocessing.PreprocessingStage
,cmp.stages.diffusion.diffusion.DiffusionStage
,cmp.stages.registration.registration.RegistrationStage
,cmp.stages.connectome.connectome.ConnectomeStage
,cmp.stages.preprocessing.fmri_preprocessing.PreprocessingStage
,cmp.stages.functional.functionalMRI.FunctionalMRIStage
,cmp.stages.connectome.fmri_connectome.ConnectomeStage
- enabled = True
- inspect_outputs = ['Outputs not available']