cmtklib.config module

Module that defines CMTK Config file function.

cmtklib.config.anat_load_config_ini(pipeline, config_path)[source]

Load the configuration file of an anatomical pipeline.

Parameters
cmtklib.config.anat_load_config_json(pipeline, config_path)[source]

Load the JSON configuration file of an anatomical pipeline.

Parameters
cmtklib.config.anat_save_config(pipeline, config_path)[source]

Save the configuration file of an anatomical pipeline.

Parameters
cmtklib.config.dmri_load_config_ini(pipeline, config_path)[source]

Load the INI configuration file of a diffusion pipeline.

Parameters
cmtklib.config.dmri_load_config_json(pipeline, config_path)[source]

Load the JSON configuration file of a diffusion pipeline.

Parameters
cmtklib.config.dmri_save_config(pipeline, config_path)[source]

Save the INI configuration file of a diffusion pipeline.

Parameters
cmtklib.config.fmri_load_config_ini(pipeline, config_path)[source]

Load the INI configuration file of a fMRI pipeline.

Parameters
cmtklib.config.fmri_load_config_json(pipeline, config_path)[source]

Load the JSON configuration file of a fMRI pipeline.

Parameters
cmtklib.config.fmri_save_config(pipeline, config_path)[source]

Save the INI configuration file of a fMRI pipeline.

Parameters
cmtklib.config.get_anat_process_detail_ini(project_info, section, detail)[source]

Get the value for a parameter key (detail) in the stage section of the anatomical INI config file.

Parameters
Returns

Return type

The parameter value

cmtklib.config.get_anat_process_detail_json(project_info, section, detail)[source]

Get the value for a parameter key (detail) in the stage section of the anatomical JSON config file.

Parameters
Returns

Return type

The parameter value

cmtklib.config.get_dmri_process_detail_ini(project_info, section, detail)[source]

Get the value for a parameter key (detail) in the stage section of the diffusion INI config file.

Parameters
Returns

Return type

The parameter value

cmtklib.config.get_dmri_process_detail_json(project_info, section, detail)[source]

Get the value for a parameter key (detail) in the stage section of the diffusion JSON config file.

Parameters
Returns

Return type

The parameter value

cmtklib.config.get_fmri_process_detail_ini(project_info, section, detail)[source]

Get the value for a parameter key (detail) in the stage section of the fMRI INI config file.

Parameters
Returns

Return type

The parameter value

cmtklib.config.get_fmri_process_detail_json(project_info, section, detail)[source]

Get the value for a parameter key (detail) in the stage section of the fMRI JSON config file.

Parameters
Returns

Return type

The parameter value

cmtklib.config.get_process_detail_ini(project_info, section, detail)[source]

Get the value for a parameter key (detail) in the Global section of the INI config file.

Parameters
Returns

Return type

The parameter value

cmtklib.config.get_process_detail_json(project_info, section, detail)[source]

Get the value for a parameter key (detail) in the global section of the JSON config file.

Parameters
Returns

Return type

The parameter value