cmp.bidsappmanager.stages.connectome.connectome module
Definition of structural connectome config and stage UI classes.
- class cmp.bidsappmanager.stages.connectome.connectome.ConnectomeConfigUI[source]
Bases:
cmp.stages.connectome.connectome.ConnectomeConfig
Class that extends the
ConnectomeConfig
with graphical components.- output_types
A list of
output_types
. Validoutput_types
are ‘gpickle’, ‘mat’, ‘cff’, ‘graphml’- Type
list of string
- connectivity_metrics
A list of connectivity metrics to stored. Valid
connectivity_metrics
are ‘Fiber number’, ‘Fiber length’, ‘Fiber density’, ‘Fiber proportion’, ‘Normalized fiber density’, ‘ADC’, ‘gFA’- Type
list of string
- traits_view
TraitsUI view that displays the Attributes of this class
- Type
traits.ui.View
- class cmp.bidsappmanager.stages.connectome.connectome.ConnectomeStageUI(bids_dir, output_dir)[source]
Bases:
cmp.stages.connectome.connectome.ConnectomeStage
Class that extends the
ConnectomeStage
with graphical components.- log_visualization
If True, display with a log transformation
- Type
traits.Bool
- circular_layout
If True, display the connectivity matrix using a circular layout
- Type
traits.Bool
- inspect_output_button
Button that displays the selected connectivity matrix in the graphical component for quality inspection
- Type
traits.ui.Button
- inspect_outputs_view
TraitsUI view that displays the quality inspection window of this stage
- Type
traits.ui.View
- config_view
TraitsUI view that displays the configuration window of this stage
- Type
traits.ui.View