cmp.bidsappmanager.stages.connectome.eeg_connectome module
Definition of EEG connectome config and stage UI classes.
- class cmp.bidsappmanager.stages.connectome.eeg_connectome.EEGConnectomeConfigUI[source]
Bases:
cmp.stages.connectome.eeg_connectome.EEGConnectomeConfig
Class that extends the
cmp.stages.connectome.eeg_connectome.EEGConnectomeConfig
with graphical components.- output_types
A list of
output_types
. Validoutput_types
are ‘gpickle’, ‘mat’, ‘cff’, ‘graphml’- Type
list of string
- connectivity_metrics
A list of time/frequency connectivity metrics to stored. Valid
connectivity_metrics
are ‘coh’, ‘cohy’, ‘imcoh’, ‘plv’, ‘ciplv’, ‘ppc’, ‘pli’, ‘wpli’, and ‘wpli2_debiased’- Type
list of string
- traits_view
TraitsUI view that displays the Attributes of this class
- Type
traits.ui.View
- class cmp.bidsappmanager.stages.connectome.eeg_connectome.EEGConnectomeStageUI(subject, session, bids_dir, output_dir)[source]
Bases:
cmp.stages.connectome.eeg_connectome.EEGConnectomeStage
Class that extends the
cmp.stages.connectome.eeg_connectome.EEGConnectomeStage
with graphical components.- log_visualization
Log visualization that might be obsolete as this has been detached after creation of the bidsappmanager (Default: True)
- Type
traits.Bool
- circular_layout
Visualization of the connectivity matrix using a circular layout that might be obsolete as this has been detached after creation of the bidsappmanager (Default: False)
- Type
traits.Bool
- inspect_output_button
Button that displays the selected connectivity matrix in the graphical component for quality inspection
- Type
traits.ui.Button
- inspect_outputs_view
TraitsUI view that displays the quality inspection window of this stage
- Type
traits.ui.View
- config_view
TraitsUI view that displays the configuration window of this stage
- Type
traits.ui.View