cmp.bidsappmanager.stages.connectome.fmri_connectome module
Definition of functional connectome config and stage UI classes.
- class cmp.bidsappmanager.stages.connectome.fmri_connectome.ConnectomeConfigUI[source]
Bases:
cmp.stages.connectome.fmri_connectome.ConnectomeConfig
Class that extends the
ConnectomeConfig
with graphical components.- output_types
A list of
output_types
. Validoutput_types
are ‘gpickle’, ‘mat’, ‘cff’, ‘graphml’- Type
list of string
- traits_view
TraitsUI view that displays the Attributes of this class
- Type
traits.ui.View
- class cmp.bidsappmanager.stages.connectome.fmri_connectome.ConnectomeStageUI(bids_dir, output_dir)[source]
Bases:
cmp.stages.connectome.fmri_connectome.ConnectomeStage
Class that extends the
ConnectomeStage
with graphical components.- log_visualization
If True, display with a log transformation
- Type
traits.Bool
- circular_layout
If True, display the connectivity matrix using a circular layout
- Type
traits.Bool
- inspect_output_button
Button that displays the selected connectivity matrix in the graphical component for quality inspection
- Type
traits.ui.Button
- inspect_outputs_view
TraitsUI view that displays the quality inspection window of this stage
- Type
traits.ui.View
- config_view
TraitsUI view that displays the configuration window of this stage
- Type
traits.ui.View