cmp.bidsappmanager.stages.connectome.eeg_connectome module

Definition of EEG connectome config and stage UI classes.

class cmp.bidsappmanager.stages.connectome.eeg_connectome.EEGConnectomeConfigUI[source]

Bases: cmp.stages.connectome.eeg_connectome.EEGConnectomeConfig

Class that extends the cmp.stages.connectome.eeg_connectome.EEGConnectomeConfig with graphical components.

output_types

A list of output_types. Valid output_types are ‘gpickle’, ‘mat’, ‘cff’, ‘graphml’

Type: list of string

connectivity_metrics

A list of time/frequency connectivity metrics to stored. Valid connectivity_metrics are ‘coh’, ‘cohy’, ‘imcoh’, ‘plv’, ‘ciplv’, ‘ppc’, ‘pli’, ‘wpli’, and ‘wpli2_debiased’

Type: list of string

traits_view

TraitsUI view that displays the Attributes of this class

Type: traits.ui.View

class cmp.bidsappmanager.stages.connectome.eeg_connectome.EEGConnectomeStageUI(subject, session, bids_dir, output_dir)[source]

Bases: cmp.stages.connectome.eeg_connectome.EEGConnectomeStage

Class that extends the cmp.stages.connectome.eeg_connectome.EEGConnectomeStage with graphical components.

log_visualization

Log visualization that might be obsolete as this has been detached after creation of the bidsappmanager (Default: True)

Type: traits.Bool

circular_layout

Visualization of the connectivity matrix using a circular layout that might be obsolete as this has been detached after creation of the bidsappmanager (Default: False)

Type: traits.Bool

inspect_output_button

Button that displays the selected connectivity matrix in the graphical component for quality inspection

Type: traits.ui.Button

inspect_outputs_view

TraitsUI view that displays the quality inspection window of this stage

Type: traits.ui.View

config_view

TraitsUI view that displays the configuration window of this stage

Type: traits.ui.View