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Getting started

  • Installation Instructions for Users

User Documentation

  • Connectome Mapper 3 and the BIDS standard
  • Commandline Usage
  • Graphical User Interface
  • Outputs of Connectome Mapper 3

API Documentation

  • Packages and modules
    • cmp package
      • Submodules
      • Pipelines and stages modules
      • GUI modules
        • cmp.bidsappmanager.core module
        • cmp.bidsappmanager.gui module
        • cmp.bidsappmanager.project module
        • cmp.bidsappmanager.pipelines.anatomical package
        • cmp.bidsappmanager.pipelines.diffusion package
        • cmp.bidsappmanager.pipelines.functional package
        • cmp.bidsappmanager.stages package
    • cmtklib package

Examples & Tutorials

  • Adopting Datalad for collaboration
  • Running on a cluster (HPC)

About Connectome Mapper

  • BSD 3-Clause License
  • Changes
  • Citing
  • Contributing to Connectome Mapper 3
  • Support, Bugs and New Feature Requests
Connectome Mapper 3
  • Docs »
  • Packages and modules »
  • cmp.bidsappmanager.stages package
  • Edit on GitHub

cmp.bidsappmanager.stages package¶

Subpackages¶

  • cmp.bidsappmanager.stages.connectome package
    • Submodules
      • cmp.bidsappmanager.stages.connectome.connectome module
      • cmp.bidsappmanager.stages.connectome.fmri_connectome module
  • cmp.bidsappmanager.stages.diffusion package
    • Submodules
      • cmp.bidsappmanager.stages.diffusion.diffusion module
      • cmp.bidsappmanager.stages.diffusion.reconstruction module
      • cmp.bidsappmanager.stages.diffusion.tracking module
  • cmp.bidsappmanager.stages.functional package
    • Submodules
      • cmp.bidsappmanager.stages.functional.functionalMRI module
  • cmp.bidsappmanager.stages.parcellation package
    • Submodules
      • cmp.bidsappmanager.stages.parcellation.parcellation module
  • cmp.bidsappmanager.stages.preprocessing package
    • Submodules
      • cmp.bidsappmanager.stages.preprocessing.fmri_preprocessing module
      • cmp.bidsappmanager.stages.preprocessing.preprocessing module
  • cmp.bidsappmanager.stages.registration package
    • Submodules
      • cmp.bidsappmanager.stages.registration.registration module
  • cmp.bidsappmanager.stages.segmentation package
    • Submodules
      • cmp.bidsappmanager.stages.segmentation.segmentation module
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© Copyright 2018-2021, Ecole Polytechnique Federale de Lausanne (EPFL), the University Hospital Center and University of Lausanne (UNIL-CHUV), Switzerland, and Contributors, all rights reserved. Revision 249e4e54.

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© Copyright 2018-2021, Ecole Polytechnique Federale de Lausanne (EPFL), the University Hospital Center and University of Lausanne (UNIL-CHUV), Switzerland, and Contributors, all rights reserved.. Last updated on Mar 07, 2021. Created using Sphinx 3.4.0.